PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta012629
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NF-YC
Protein Properties Length: 144aa    MW: 16932.4 Da    PI: 5.2346
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25133621PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC171.11.3e-5381121102
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql++fw++q   +e++++fk+h+lPlarikki+k+dedvkmisaeaPvl+skacelfileltlrswlh+eenkrrtl+++dia a++r d+ dfl+divp
  Pta012629   8 QLQMFWQQQmqeMEQVAEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLDFLLDIVP 107
                89*****9988899************************************************************************************** PP

      NF-YC  98 rdelk 102
                rde+k
  Pta012629 108 RDEVK 112
                **975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.05E-317102IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.2E-372193IPR009072Histone-fold
PfamPF008082.5E-213093IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
XMQIQKQQLQ MFWQQQMQEM EQVAEFKQHQ LPLARIKKIM KSDEDVKMIS AEAPVLFSKA  60
CELFILELTL RSWLHTEENK RRTLQRNDIA GAISRGDVLD FLLDIVPRDE VKDVMAAQQT  120
MSQQLMSQQP LMPDQPLMYQ PPQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C6e-44910819119HapE
4g92_C6e-44910819119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086RRTLQRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.115630.0root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422281.11e-59hypothetical protein CICLE_v10007003mg
RefseqXP_006493757.11e-59PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_006493758.11e-59PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_006493759.11e-59PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG71e-59NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
SwissprotQ9FMV53e-59NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA9NUT05e-75A9NUT0_PICSI; Putative uncharacterized protein
STRINGPP1S315_9V6.31e-62(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.11e-52nuclear factor Y, subunit C1